PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA39G00248
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family ARF
Protein Properties Length: 896aa    MW: 99040.6 Da    PI: 5.7302
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA39G00248genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772e-24156257199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae+         +++++  +l+++d++ ++W++++iyr++++r++lt+GW+ Fv +++L++gD+v+F   ++++ +l
  AA39G00248 156 FCKTLTASDTSTHGGFSVPRRAAEKLfpsldytAQPPTQ--ELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFI--RDEKSQL 250
                 99*********************999****996444444..8************************************************..4577778 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+v+r+
  AA39G00248 251 MVGVRRA 257
                 *****97 PP

2Auxin_resp1125.9e-37282365183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aaha++++++F+++YnPra+++eFv++++k++ka+  +++svGmRf m+feteds +rr++Gt+vg+sdldp+rW +SkWr+L+
  AA39G00248 282 AAHATANRTPFTIFYNPRACPAEFVIPIAKYRKAICgSQLSVGMRFGMMFETEDSGKRRYMGTIVGISDLDPLRWAGSKWRNLQ 365
                 79********************************9989********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-45146285IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-41148270IPR015300DNA-binding pseudobarrel domain
CDDcd100172.27E-22155256No hitNo description
PROSITE profilePS5086313.155156258IPR003340B3 DNA binding domain
PfamPF023624.5E-22156257IPR003340B3 DNA binding domain
SMARTSM010195.1E-25156258IPR003340B3 DNA binding domain
PfamPF065075.6E-32282365IPR010525Auxin response factor
PfamPF023092.1E-9778873IPR033389AUX/IAA domain
PROSITE profilePS5174523.437787871IPR000270PB1 domain
SuperFamilySSF542775.59E-7801866No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009908Biological Processflower development
GO:0009942Biological Processlongitudinal axis specification
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0048507Biological Processmeristem development
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0042802Molecular Functionidentical protein binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 896 aa     Download sequence    Send to blast
MASLASIEEK MKSNGPTTTT TTNSQSSLIE EMKLLKEMQD QSGTRKPVIN SELWHACAGP  60
LVCLPQVGSL VYYFSQGHSE QVAVSTRRSA TTQVPNYPNL PSQLMCQVHN VTLHADKDSD  120
EIYAQMSLQP VHSERDVFPV PDFGMLRGSK HPAEFFCKTL TASDTSTHGG FSVPRRAAEK  180
LFPSLDYTAQ PPTQELVVRD LHENTWTFRH IYRGQPKRHL LTTGWSLFVG SKRLRAGDSV  240
LFIRDEKSQL MVGVRRANRQ QTALPSSVLS ADSMHIGVLA AAAHATANRT PFTIFYNPRA  300
CPAEFVIPIA KYRKAICGSQ LSVGMRFGMM FETEDSGKRR YMGTIVGISD LDPLRWAGSK  360
WRNLQVEWDE PGCNDKPTRV SPWDIETPES LFIFPSLTSG LKRPLHPSYF AGETEWGNLI  420
KRPLIRISDA ANGILPYSSF PNMASEQLMK MMMKPHNNTN AASLMSEMQH TMIGHGVLQS  480
DLKMQQPVMN QKVEVVQQEH KLTVNSTSSM TSAQEQNLSQ SMSAGTKADK PALSGCSSGR  540
LKHDPEQSIE QASQMTTVTG CNEEKVNQMS QKPGLLSPLQ SDPCPEISQQ IYPPQSDPIS  600
FNGLSFLETD ELASQVSSFQ SLASPYKQPL MLGSQDSSAV MLPDSANSSL FHDVWDNQLS  660
GLKFDQFSPL TQQDLYACQN ICMSNSTTSN ILDPPLSNTV LDEFCAMKET DFQNPSSCMV  720
GNTSFTQDVQ SQITSASFAD SQAFSRQDFP DNSGGTGTSS SNVDFDESSL LQNSKSSWQK  780
VATPRVRTYT KVQKAGSVGR SIDVTSFRDY EELKSAIECM FGLEGLLTNP QSSGWKLVYV  840
DYESDVLLVG DDPWEEFVGC VRCIRILSPT EVQQMSEEGM KLLNSAGMND IKTSVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.013902392Auxin response factor 5
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00153DAPTransfer from AT1G19850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002890356.10.0hypothetical protein ARALYDRAFT_472210
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLA0A087H7S50.0A0A087H7S5_ARAAL; Auxin response factor
STRINGfgenesh2_kg.1__2164__AT1G19850.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58082746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein